Publications

2016 :

Piovesan, Damiano, Francesco Tabaro, Ivan Mičetić, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidović, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmar, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Eva Schad, Antoine Schramm, Beata Szabo, Agnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljković, Salvador Ventura, Wim Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, and Silvio C.E. Tosatto. “DisProt 70: a major update of the database of disordered proteins.” Nucleic Acids Research 45, no. D1 (2016): D219-D227. doi: 10.1093/nar/gkw1056

Paladin, Lisanna, Layla Hirsh, Damiano Piovesan, Miguel A. Andrade-Navarro, Andrey V. Kajava, and Silvio C.E. Tosatto. “RepeatsDB 20: improved annotation, classification, search and visualization of repeat protein structures.” Nucleic Acids Research 45, no. D1 (2016): D308-D312. doi: 10.1093/nar/gkw1136

Vallejo, Andres F., Nora L. Martinez, Alejandra Tobon, Jackeline Alger, Marcus V. Lacerda, Andrey V. Kajava, Myriam Arévalo-Herrera, and Sócrates Herrera. “Global genetic diversity of the Plasmodium vivax transmission-blocking vaccine candidate Pvs48/45.” Malaria Journal 15, no. 1 (2016). doi: 10.1186/s12936-016-1263-0

Richard, François D., Ronnie Alves, and Andrey V. Kajava. “Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences.” Bioinformatics 32, no. 13 (2016): 1952-1958. doi: 10.1093/bioinformatics/btw118


2015 :

Dearborn, Altaira D., Joseph S. Wall, Naiqian Cheng, J. Bernard Heymann, Andrey V. Kajava, Jobin Varkey, Ralf Langen, and Alasdair C. Steven. “α-Synuclein Amyloid Fibrils with Two Entwined, Asymmetrically Associated Protofibrils.” Journal of Biological Chemistry 291, no. 5 (2015): 2310-2318. doi: 10.1074/jbc.M115.698787

Bazan, J Fernando, and Andrey V Kajava. “Designs on a curve.” Nature Structural & Molecular Biology 22, no. 2 (2015): 103-105. doi: 10.1038/nsmb.2966

Kholod, Natalia, Dmitry Sivogrivov, Oleg Latypov, Sergey Mayorov, Rafail Kuznitsyn, Andrey V. Kajava, Mikhail Shlyapnikov, and Igor Granovsky. “Single substitution in bacteriophage T4 RNase H alters the ratio between its exo- and endonuclease activities.” Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 781 (2015): 49-57. doi: 10.1016/j.mrfmmm.2015.09.004

Do Viet, Phuong, Daniel B. Roche, and Andrey V. Kajava. “TAPO: A combined method for the identification of tandem repeats in protein structures.” FEBS Letters 589, no. 19PartA (2015): 2611-2619. doi: 10.1016/j.febslet.2015.08.025

Richard, F. D., and A. V. Kajava. “In search of the boundary between repetitive and non-repetitive protein sequences.” Biochemical Society Transactions 43, no. 5 (2015): 807-811. doi: 10.1042/BST20150073

Ramya, L., N. Gautham, Laurent Chaloin, and Andrey V. Kajava. “Restricted mobility of side chains on concave surfaces of solenoid proteins may impart heightened potential for intermolecular interactions.” Proteins: Structure, Function, and Bioinformatics 83, no. 9 (2015): 1654-1664. doi: 10.1002/prot.24851

Wang, Keke, Philippe Remigi, Maria Anisimova, Fabien Lonjon, Ilona Kars, Andrey Kajava, Chien-Hui Li, Chiu-Ping Cheng, Fabienne Vailleau, Stéphane Genin, and Nemo Peeters. “Functional assignment to positively selected sites in the core type III effector RipG7 fromRalstonia solanacearum.” Molecular Plant Pathology 17, no. 4 (2015): 553-564. doi: 10.1111/mpp.12302

Bondarev, Stanislav A, Galina A Zhouravleva, Mikhail V Belousov, and Andrey V Kajava. “Structure-based view on [PSI+] prion properties.” Prion 9, no. 3 (2015): 190-199. doi: 10.1080/19336896.2015.1044186

Fort, P., A. V. Kajava, F. Delsuc, and O. Coux. “Evolution of Proteasome Regulators in Eukaryotes.” Genome Biology and Evolution 7, no. 5 (2015): 1363-1379. doi: 10.1093/gbe/evv068

Ahmed, Abdullah B., Nadia Znassi, Marie-Thérèse Château, and Andrey V. Kajava. “A structure-based approach to predict predisposition to amyloidosis.” Alzheimer's & Dementia 11, no. 6 (2015): 681-690. doi: 10.1016/j.jalz.2014.06.007


2014 :

Kajava, Andrey V., Karsten Klopffleisch, Shuhua Chen, and Kay Hofmann. “Evolutionary link between metazoan RHIM motif and prion-forming domain of fungal heterokaryon incompatibility factor HET-s/HET-s.” Sci Rep 4 (2014): 7436. doi: 10.1038/srep07436

Balam, Saidou, Sope Olugbile, Catherine Servis, Mahamadou Diakité, Alba D’Alessandro, Geraldine Frank, Remy Moret, Issa Nebie, Marcel Tanner, Ingrid Felger, Thomas Smith, Andrey V Kajava, François Spertini, and Giampietro Corradin. “Plasmodium falciparum merozoite surface protein 2: epitope mapping and fine specificity of human antibody response against non-polymorphic domains.” Malaria Journal 13, no. 1 (2014): 510. doi: 10.1186/1475-2875-13-510

Huang, Rick K., Ulrich Baxa, Gudrun Aldrian, Abdullah B. Ahmed, Joseph S. Wall, Naoko Mizuno, Oleg Antzutkin, Alasdair C. Steven, and Andrey V. Kajava. “Conformational Switching in PolyGln Amyloid Fibrils Resulting from a Single Amino Acid Insertion.” Biophysical Journal 106, no. 10 (2014): 2134-2142. doi: 10.1016/j.bpj.2014.03.047

Céspedes, Nora, Catherine Habel, Mary Lopez-Perez, Angélica Castellanos, Andrey V. Kajava, Catherine Servis, Ingrid Felger, Remy Moret, Myriam Arévalo-Herrera, Giampietro Corradin, and Sócrates Herrera. “Plasmodium vivax Antigen Discovery Based on Alpha-Helical Coiled Coil Protein Motif.” PLoS ONE 9, no. 6 (2014): e100440. doi: 10.1371/journal.pone.0100440

Richard, François D., and Andrey V. Kajava. “TRDistiller: A rapid filter for enrichment of sequence datasets with proteins containing tandem repeats.” Journal of Structural Biology 186, no. 3 (2014): 386-391. doi: 10.1016/j.jsb.2014.03.013

Benbahouche, Nour El Houda, Ioannis Iliopoulos, István Török, Joachim Marhold, Julien Henri, Andrey V. Kajava, Robert Farkaš, Tore Kempf, Martina Schnölzer, Philippe Meyer, István Kiss, Edouard Bertrand, Bernard M. Mechler, and Bérengère Pradet-Balade. “DrosophilaSpag Is the Homolog of RNA Polymerase II-associated Protein 3 (RPAP3) and Recruits the Heat Shock Proteins 70 and 90 (Hsp70 and Hsp90) during the Assembly of Cellular Machineries.” Journal of Biological Chemistry 289, no. 9 (2014): 6236-6247. doi: 10.1074/jbc.M113.499608


2012 :

Corradin, Giampietro, Nora Céspedes, Antonio Verdini, Andrey V. Kajava, Myriam Arévalo-Herrera, and Sócrates Herrera. “Malaria Vaccine Development Using Synthetic Peptides as a Technical Platform.” Synthetic Vaccines (2012): 107-149. doi: 10.1016/B978-0-12-396548-6.00005-6

Jorda, Julien, Thierry Baudrand, and Andrey V. Kajava. “PRDB: Protein Repeat DataBase.” Proteomics 12, no. 9 (2012): 1333-1336. doi: 10.1002/pmic.201100534

Kajava, Andrey V., and Andrey V. Kajava. “Tandem repeats in proteins: From sequence to structure.” Journal of Structural Biology 179, no. 3 (2012): 279-288. doi: 10.1016/j.jsb.2011.08.009

Jorda, Julien, Thierry Baudrand, and Andrey V. Kajava. “PRDB: Protein Repeat DataBase.” Proteomics 12, no. 9 (2012): 1333-1336. doi: 10.1002/pmic.201100534

Ahmed, Abdullah B., and Andrey V. Kajava. “Breaking the amyloidogenicity code: Methods to predict amyloids from amino acid sequence.” FEBS Letters 587, no. 8 (2012): 1089-1095. doi: 10.1016/j.febslet.2012.12.006


2009 :

Gondeau, Claire, Giampietro Corradin, Frédéric Heitz, Christian Le Peuch, Andrea Balbo, Peter Schuck, and Andrey V. Kajava. “The C-terminal domain of Plasmodium falciparum merozoite surface protein 3 self-assembles into α-helical coiled coil tetramer.” Molecular and Biochemical Parasitology 165, no. 2 (2009): 153-161. doi: 10.1016/j.molbiopara.2009.01.015


2004 :

Kajava, Andrey V., Sergey A. Potekhin, Giampietro Corradin, and Richard D. Leapman. “Organization of designed nanofibrils assembled fromα-helical peptides as determined by electron microscopy.” Journal of Peptide Science 10, no. 5 (2004): 291-297. doi: 10.1002/psc.520


2000 :

Kajava, A.V., S.N. Zolov, A.E. Kalinin, M.A. Nesmeyanova, "The net charge of the first 18 residues of the mature sequence affects protein translocation across the cytoplasmic membrane of gram-negative bacteria" J.Bacteriol182 (2000): 2163-2169. DOI : 182:2163-2169